rs29717633 SNP Detail

Summary

• ID
  rs29717633
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152636026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTTCCAG AGGTCCTGAG
  TTCAAGTCCC AGCAACCACA TGGTTGACTA ACAACCATCT GTAATGGGGT CCAATGCTAT
  CTTCTGGTGT GTATCTGAAG ACAGCTACAG TATACTCATA TAAATAAATA AATAAATAAA
  TAATCACTAG CAGAGCCAGT TGTGGTGGCA CATGAATTTA ATCCTAGTAC CTAGGCAGAG
  K
  TAAGTGGATT TCTGTGAGTT CAAGGCCAAG CATTGCCCCC AGAATGCAGC TAAAGAAAGA
  AGTGGTCTTG GGGAAGGTGT GGCTAGGCGA GTAACAGAGC CAGAAAAGCT ATCCCAGTGC
  CAGGCACAGA GTTGGCAGTT CTATAGAGAA CAAAGACCAG AGTGTGCCAG GCTTGAGGGG
  CCTAGTGAAG CAGCATCGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45355532	mCV27575583	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss147974670	ENSMUSSNP6816144	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29717633					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152636026 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l1	BCL2-like 1			Intron
				Noncoding-Transcript-Variant
Rr367333	regulatory region 367333			335 bp upstream
Rr374092	regulatory region 374092			679 bp downstream
Rr567472	regulatory region 567472			1164 bp distal
Rr567473	regulatory region 567473			184 bp distal
Rr567474	regulatory region 567474			100 bp proximal
Tssr26859	transcription start site region 26859			1521 bp upstream