rs29717682 SNP Detail

Summary

• ID
  rs29717682
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102488601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GGGAGAGAGA GAGAGAGAAA TTATGGCATC
  CCTCACACCC TGCTCGCCCT CGGGGAACCA CATTAATATT AATCTAGACG AATGATTGAA
  TGTCCGGGAT TTATTCGGGC CCGGGTAAAG AAGGACCCGC AGCTGGGTCG CGTTTCCTTC
  M
  GGTCACCTGA GTGTTTCTGC AGCTCAGATT CAGTGGGACT TCTACTCTCA GAAGTGGTAG
  GATGTGGGTG GGTGTGCCGG CCTGTGTGAT GTGAGCCCGA GCAGATGTCC AGGGAGTGAT
  GGGGAGTGCC AAGGCTTCTC CAAGGATTGG GGACGGAGGG GCATCCCGGG TCTCAGCGCT
  TGGCCCAGCA CAGGGTGACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45354241	mCV23733488	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss320439894	CHEV_2_102498413	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29717682					SNP	A	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102488601 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	338 bp proximal
Gm57687	predicted gene, 57687	1444 bp upstream
Rr561712	regulatory region 561712	1591 bp distal
Rr561713	regulatory region 561713	within coordinates
Rr561714	regulatory region 561714	535 bp proximal
Rr561715	regulatory region 561715	535 bp proximal
Rr561716	regulatory region 561716	1036 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	403 bp upstream
Tssr19098	transcription start site region 19098	17 bp downstream
Tssr19099	transcription start site region 19099	24 bp upstream
Tssr19100	transcription start site region 19100	320 bp upstream
Tssr19101	transcription start site region 19101	384 bp upstream
Tssr19102	transcription start site region 19102	421 bp upstream
Tssr19103	transcription start site region 19103	470 bp upstream
Tssr19104	transcription start site region 19104	496 bp upstream
Tssr19105	transcription start site region 19105	562 bp upstream
Tssr19106	transcription start site region 19106	587 bp upstream
Tssr19107	transcription start site region 19107	598 bp upstream
Tssr19108	transcription start site region 19108	641 bp upstream
Tssr19109	transcription start site region 19109	677 bp upstream
Tssr19110	transcription start site region 19110	957 bp upstream