rs29717933 SNP Detail

Summary

• ID
  rs29717933
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31204822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATC TAGGGCTTAA TATTCCTCAA
  R
  ATCTGAATGG CCTTTCTCAT TAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45854414	mCV22340602	ABI	CRAMUS_MOUSE	f	SNP	G	G	A						G
ss47667765	NES10247013	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A	G	G	A	A		G	A	G	G		G
ss148191027	ENSMUSSNP3101816	ENSEMBL	ENSEMBL_Sanger	f	SNP			A						G
ss321503414	CHEV_5_31349851	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29717933					SNP	G	G	A	G	A	G	A	G	G	A	A	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47667765	NES10247013	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31204822 () rs orientation: forward

Symbol	Name	Function Class
Atraid	all-trans retinoic acid induced differentiation factor	1162 bp upstream
Cpgi15696	CpG island 15696	257 bp proximal
D5Jcs306	DNA segment, Chr 5, John C. Schimenti 306	1202 bp distal
Rr125009	regulatory region 125009	within coordinates
Rr399020	regulatory region 399020	976 bp upstream
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	within coordinates
Tssr45658	transcription start site region 45658	1149 bp upstream
Tssr45659	transcription start site region 45659	1551 bp upstream
Tssr50520	transcription start site region 50520	380 bp downstream
Tssr50521	transcription start site region 50521	401 bp downstream
Tssr50522	transcription start site region 50522	520 bp downstream
Tssr50523	transcription start site region 50523	536 bp downstream
Tssr50524	transcription start site region 50524	758 bp downstream