rs29717937 SNP Detail

Summary

• ID
  rs29717937
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:52315510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGT TAAATAGATG GCCAAATGCT
  R
  TCTGTGCTCT TCATTCTGCT GCTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss45356107	mCV24651196	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss146590323	ENSMUSSNP3209971	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320303834	CHEV_2_52281018	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs29717937					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52315510 () rs orientation: forward

Symbol	Name	Function Class
A430018G15Rik	RIKEN cDNA A430018G15 gene	within coordinates
Arl5a	ADP-ribosylation factor-like 5A	624 bp upstream
Cpgi11647	CpG island 11647	340 bp distal
Rr556939	regulatory region 556939	608 bp distal
Rr556940	regulatory region 556940	543 bp distal
Rr556941	regulatory region 556941	within coordinates
Tssr494	transcription start site region 494	555 bp upstream
Tssr17726	transcription start site region 17726	477 bp downstream
Tssr17727	transcription start site region 17727	252 bp downstream
Tssr24072	transcription start site region 24072	692 bp upstream
Tssr24073	transcription start site region 24073	676 bp upstream
Tssr24074	transcription start site region 24074	582 bp upstream