rs29718292 SNP Detail

Summary

• ID
  rs29718292
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10607580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAGAGGC TTCATCCTTC
  ACTGAAGATC TAGAGGTAGT TAGTTAATGG CTGGTAGAGG GAGAGACATT TTCTTTTGAG
  TGCAAGCACT CTAAGATGTG ATCCCATAAA AATCCCTAAC TAGGGCTGAT GAGATGGCTA
  AGCGGGTAAG ACACTGACTG CTCTTCCAAA GGTCCTGTGT TCAAATCCCA GCAACCACAT
  R
  GTGTCTCACA ACTACCCGTT ATGAGATCTG ACAACCTCTT CTGGTTCATC TGATGATAAC
  TACAGTGTAC TTATTTATAA TAATAAATCT TTGGGCTGGA GCGAACAGAG ACTAAGTGAG
  CAGGACCAAC TAGAGCAAGA AGGTCTGACC TGAGCAAGGA GAGGTGCTAA ATTCAATAAC
  CCAACAACCA CATGAAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39606858	mCV27569894	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss146607026	ENSMUSSNP4548180	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
ss325524282	CHEV_18_10607578	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29718292					SNP	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10607580 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	1852 bp proximal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	within coordinates
Rr533778	regulatory region 533778	1544 bp proximal