rs29719091 SNP Detail

Summary

• ID
  rs29719091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3331751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGCTAAA ACTTTAAGTC
  TCCCTCCTCT CATGATTCCC AAGTCCCTAA AACATTTGAA ACATGCAGGC CCATATTTTC
  CCTCTCACAT GATTATAAGA TGACTGCTTT GGCGGGCAAT TTCATGAAAA ATAAAAAAAA
  TATGAAATTC AGAGATTAAT CCATTAGGGA GAAGTAAATG GGCTGCGCTC CTTCCAAAAG
  Y
  AAATCCGAAA CAAAACACTG TTATTTGTTC TTCCTATAAT AATTAACCTT ACAGACAAGT
  TAGGACGTTA ACTGCTCTCT TGTCGGGCAT TCATTCATTT AAACCCTGTT TATCCTTCCC
  AAAGGCAACT GTATACCTCT GCTCTCAGTT GTCTCCTTCT TAGAGTTCAT CTGAGAACTA
  TGAAGACCCA GTTGACAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45357620	mCV27554300	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss146261284	ENSMUSSNP5065034	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29719091					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3331751 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11150	CpG island 11150	1465 bp proximal
Nmt2	N-myristoyltransferase 2	1837 bp downstream
Rpp38	ribonuclease P/MRP 38 subunit	Intron
Rr396749	regulatory region 396749	1821 bp upstream
Rr550889	regulatory region 550889	457 bp proximal
Rr550890	regulatory region 550890	1919 bp proximal
Tssr22355	transcription start site region 22355	1709 bp downstream
Tssr22356	transcription start site region 22356	1733 bp downstream
Tssr22357	transcription start site region 22357	1852 bp downstream