rs29720084 SNP Detail

Summary

• ID
  rs29720084
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164666176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGTTTTC AATCCTCTAT
  ACTGCCAGTG AGCTATTATG ATCTCCTATT GTCTAGAATG ACCTTGAACT GACCCTGCTG
  CCTCCACCTC CCAGGTGCTG GGATTACAGG TGTTGGTGCC ACACCCAATT CCCTAGTTCT
  TTTGTTTGGT TGGTTCGGGA TTTTTGCATG CATGAGTGTG TGGTGGTTGT TAGGGGTTTT
  K
  TTTTTGTTTT TTGTTTTTTT AAGACAGGTT CTCTCTAAAT TGCCTGTGCT GGTCTTGAGC
  TGATCCAGTG ACGCCTGGTG ACGCTTCTGT CTCAGCATTT TAGGTAGCTT AGATCACAAA
  GGTACACCAC TGCATGTGAC TTCCTGCCCT TTTTAGTTCC TGGGCTGGCT TGTTATTTAT
  CCCTCATATC CGGGGAAATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45357127	mCV23739688	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29720084					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164666176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12673	CpG island 12673	962 bp distal
Rr374206	regulatory region 374206	within coordinates
Rr569723	regulatory region 569723	1560 bp distal
Rr569724	regulatory region 569724	558 bp distal
Rr569725	regulatory region 569725	1434 bp distal
Rr569726	regulatory region 569726	1058 bp distal
Tssr21653	transcription start site region 21653	1281 bp downstream
Tssr21654	transcription start site region 21654	1216 bp downstream
Tssr21655	transcription start site region 21655	1184 bp downstream
Zswim1	zinc finger SWIM-type containing 1	Intron