rs29720178 SNP Detail

Summary

• ID
  rs29720178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136721014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG TTTGATTCTC CAGAACTCAG
  R
  TGGAGAAAAG GTGGGTGTGG TGTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45854065	mCV25025790	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss144517151	ENSMUSSNP2900316	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321700201	CHEV_5_137168030	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs29720178					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136721014 () rs orientation: forward

Symbol	Name	Function Class
Gm71524	predicted gene, 71524	840 bp downstream
Myl10	myosin, light chain 10, regulatory	986 bp upstream
Rr127468	regulatory region 127468	14 bp distal
Rr127469	regulatory region 127469	787 bp proximal
Tssr49256	transcription start site region 49256	631 bp downstream
Tssr49257	transcription start site region 49257	660 bp upstream
Tssr49258	transcription start site region 49258	796 bp upstream
Tssr49259	transcription start site region 49259	859 bp upstream
Tssr49260	transcription start site region 49260	924 bp upstream
Tssr49261	transcription start site region 49261	1436 bp upstream
Tssr49262	transcription start site region 49262	1454 bp upstream
Tssr49263	transcription start site region 49263	1497 bp upstream
Tssr49264	transcription start site region 49264	1507 bp upstream
Tssr49265	transcription start site region 49265	1961 bp upstream
Tssr49266	transcription start site region 49266	1983 bp upstream