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rs29720196 SNP Detail
Summary
  • ID
    rs29720196
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:119726408 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TTTTCCTGAA TCATGGATTT CAGAAGTCTG TAAACTTTAG
    TTCAGTTTCT GCCTATGTGT TGCGTATCTC CTCAGGAATA AATAGCTAAG TGAAACGAAG
    Y
    AAGTCAGATC AACCCTGTTG GCTATCCTTG TCCTTCCTCT TGGCTCCATC CTTACATTCT
    TGGTTTCCTT CAAAGTGTTT GTATTGTCAC TTAGCACAA                       
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss45356932 mCV24941028 ABI CRAMUS_MOUSE f SNP C T C
ss147345337 ENSMUSSNP797627 ENSEMBL ENSEMBL_Sanger f SNP C T T
ss320477919 CHEV_2_119721663 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs29720196 SNP C T C T C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:119726408 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4930485G23Rik RIKEN cDNA 4930485G23 gene within coordinates
Cpgi12132 CpG island 12132 961 bp proximal
Gm75581 predicted gene, 75581 within coordinates
Gm75585 predicted gene, 75585 within coordinates
Mga MAX gene associated Intron
mRNA-UTR
Noncoding-Transcript-Variant
Rr563600 regulatory region 563600 608 bp proximal
Rr563601 regulatory region 563601 1220 bp proximal
Rr563602 regulatory region 563602 1312 bp proximal
Tssr19669 transcription start site region 19669 1285 bp upstream
Tssr19670 transcription start site region 19670 1620 bp upstream
Tssr25831 transcription start site region 25831 1193 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory