rs29720233 SNP Detail

Summary

• ID
  rs29720233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43860754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG GTCAGCCAGA TCAAAAAGAA
  Y
  ACCCTTGCAA CTTGTCTGCT GGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39606583	mCV24080461	ABI	CRAMUS_MOUSE	f	SNP		C	T	C
ss147020873	ENSMUSSNP3834957	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss325601067	CHEV_18_43887343	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29720233					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43860754 () rs orientation: forward

Symbol	Name	Function Class
Rr345822	regulatory region 345822	154 bp distal
Rr356243	regulatory region 356243	286 bp distal
Rr393629	regulatory region 393629	1795 bp downstream
Spink1	serine peptidase inhibitor, Kazal type 1	380 bp downstream