rs29720302 SNP Detail

Summary

• ID
  rs29720302
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150629094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAGCCGTTGA CGGACAGTGA GAGGCAGAAG CAGATCAGCG TGCGTGGCAT CGCGGGGCTG
  GGCGACGTGG CCGAGGTGCG GAAGAGCTTC AACAGACACC TGCATTTCAC GCTGGTCAAG
  GACCGCAATG TGGCCACGCC CCGCGACTAC TTCTTCGCTC TGGCACACAC AGTTCGCGAC
  CACCTAGTGG GCCGCTGGAT CCGCACGCAG CAGCATTACT ATGAGCGGGA CCCCAAGGTG
  AGCAGCCCGC CCTCCCTGGG AGGGAGACCG AGCCCAGGGC AGGGCGGGTC CCGCCCCCCC
  S
  CCCCTCCCAA GTATCGCCCA CGGGCCTGGT CCCTGTTGCA CCACGGTCAC CTGCGACCAA
  TGAAGAGACA GTAGAGTTAT GCATCCTCCT TCGAAGGACC GGTGCATACC CTCTCTTTCG
  GGTTTCGTTT TAATTGAGAC CCATCCCCCT GCTCCCCGGC CCGCAGTCCC CAGTCCCTAA
  GTATGGCTTT GAGTGGCCCC TTGTCTTCCA CCGCAGTCAG TCCCCCACCG GTACGTTGTC
  TGGAATCTGG CTGTATGGAG CCAGGCCTCT GCCCACGGCG GAGTTGCGCA TCCCAGAGAA
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45355949	mCV24554257	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29720302					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150629094 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12412	CpG island 12412	within coordinates
Gm30141	predicted gene, 30141	480 bp upstream
Gm57834	predicted gene, 57834	1445 bp upstream
Pygb	brain glycogen phosphorylase	Intron
Rr397385	regulatory region 397385	328 bp downstream
Rr567101	regulatory region 567101	429 bp distal
Rr567102	regulatory region 567102	1603 bp proximal
Tssr20709	transcription start site region 20709	380 bp downstream
Tssr20710	transcription start site region 20710	357 bp downstream