rs29720453 SNP Detail

Summary

• ID
  rs29720453
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163838004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGATTT ATCTGAACCT
  TTCACTGACT CAAACCGGAT TCCCAATGGG GTGGGGGAAG ATCAGGCTGA GAATTGAGTC
  TTTTCTCTTG ATATTTGTCG TCTTTTACTG CCAGAATCTC GTGTGTCCAT GCCCCAAATT
  CATCCATACA CTTTTTTGTG GCATATATAT ATATATATGT GTGTGTGTGT GTGTGTGTGT
  R
  TATGTTATAT ATTGTTTGAA ATTTGTCTAG TAACCTCAGT GTTTGAGGAA GGAGTAGGCA
  AGATGTGGAC CCTTTTTTGC AAGATGAGCG CATCTGGGTC TGTTGCAAAT GGAGAACATG
  CGTGCATCGA GGATTCCAAA GGTGGCAGCG TTGGTGAGAA TTTGCCAACC TCTGTAAAAA
  TGCATGGCTC ATGTCCTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45357247	mCV22800594	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss148218309	ENSMUSSNP2543312	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss320604716	CHEV_2_163821820	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29720453					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163838004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12645	CpG island 12645	221 bp distal
Rr56027	regulatory region 56027	within coordinates
Rr397469	regulatory region 397469	855 bp downstream
Tssr21496	transcription start site region 21496	935 bp downstream
Tssr21497	transcription start site region 21497	855 bp downstream
Tssr21498	transcription start site region 21498	838 bp downstream
Tssr21499	transcription start site region 21499	802 bp downstream
Ywhab	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	within coordinates