rs29720494 SNP Detail

Summary

• ID
  rs29720494
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:25776871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATTAGGGC AAGGCTCCTG AGCACCCAGT AGTCCACACT
  TACCAGGCTT TAGGCTGACT GGTGTTAAAA CACTTTGGGG CTGTTGGAAT AGTCAGTCCT
  W
  GCGAGGCACT GACATGGAAC TCTCCAACTG TCTTGACGGA ACCTGTACCT GATCAGAGGA
  ACATGATGTC CAGCATCTAC CTGCCCTGGG TTTGGTGCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45354949	mCV23192839	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss146380985	ENSMUSSNP1812724	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29720494					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25776871 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnt1	potassium channel, subfamily T, member 1			Intron
				Noncoding-Transcript-Variant
Rr553167	regulatory region 553167			868 bp distal
Rr553168	regulatory region 553168			458 bp proximal
Rr553169	regulatory region 553169			1492 bp proximal