rs29720510 SNP Detail

Summary

• ID
  rs29720510
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173916732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGGGAGAC CGGCTCGGCG
  GTTGTTTACT AACGCCGTAA GCACAAAAAG GAGAAGGAGG AGGAGGAGGA GGAGGAGGAG
  GAGGAGGAGG AGGAGGAGTG GGCTTTGCCA CGTGACTGGG GTCAGCTCTC ACCAGCAGGG
  TGGGCTGCCG GAACTCTTCC CTCACTGCAC AAATATCCCC TGGGGTCTGC ACACAGGGTT
  S
  CTCTTATTTC CCTCCACGAA ATTAACCCGG GGCCTGTGGT TTTGGAGCAG CAGAGTGCTT
  GGTTCTATGG CCCCAGCGGG GTCTGGGCTG TTTGTCACCT TCCGAGCAGC CCCCGCTGAT
  CGTCAACCGC TGCGGGGGGA GTGGGCGCCC CTGTCTTTAA GGAGCTCGGC ATCGGAATCA
  TCTCTTCTCT ATCAGCTCGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45355062	mCV24858259	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss148339417	ENSMUSSNP181710	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29720510					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173916732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12851	CpG island 12851	70 bp proximal
Cpgi12852	CpG island 12852	1208 bp proximal
Gm75644	predicted gene, 75644	within coordinates
Rr572060	regulatory region 572060	1221 bp distal
Rr572061	regulatory region 572061	within coordinates
Rr572062	regulatory region 572062	5 bp proximal
Rr572063	regulatory region 572063	1307 bp proximal
Rr572064	regulatory region 572064	1493 bp proximal
Rr572065	regulatory region 572065	1994 bp proximal
Stx16	syntaxin 16	1369 bp upstream
Tssr22077	transcription start site region 22077	1357 bp upstream