rs29720636 SNP Detail

Summary

• ID
  rs29720636
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165436282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGACTT GGAGACACCT
  GAAGTCCCAG TATCTGAGCA GCAGCAGTAG TAATCTGAAG CCAGCTGAGC CCCCATAAGG
  GAGGCACTGG GACTGGGGAA TGGCATAGTC ATTAAAGCAC CATGCTAGCA GAAGGGCTTG
  AGTTCAGATC CCCAGTAGCT AAGTAAAATG CTAGGCGTGG CAGCAGGTGC CTATAATGCG
  K
  CGCCTAAGAG GCAGAGGCAG GAGGATCCCT GGAGCAAGCT TGCTGGCCAG CCCCTCCAGC
  TGAATCCTGA ATCAAAAACC TCCATCTTCA AAAAGAAACC TTGCGTTGGG GGGTGGGGGG
  AGAGCTATTG ACAAAAACAG TACTGCTGAC CTCTGGCCTA ATACATACAC GCTCACCCTC
  ACACTCACAC TTTCCTGTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45356138	mCV23022172	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	T
ss148241310	ENSMUSSNP733727	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
ss320608370	CHEV_2_165419862	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29720636					SNP	G	G	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165436282 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	242 bp proximal
Eya2	EYA transcriptional coactivator and phosphatase 2	670 bp upstream
Rr569954	regulatory region 569954	408 bp distal
Rr569955	regulatory region 569955	180 bp proximal
Rr569956	regulatory region 569956	681 bp proximal
Rr569957	regulatory region 569957	852 bp proximal
Rr569958	regulatory region 569958	1029 bp proximal
Tssr21727	transcription start site region 21727	647 bp upstream
Tssr21728	transcription start site region 21728	1809 bp upstream