rs29720906 SNP Detail

Summary

• ID
  rs29720906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164586608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAG GTACATAAAT GATGTACATA
  Y
  ATACATGCAT ACCAGCAAAA CACTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45354466	mCV23594272	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss148231805	ENSMUSSNP6952132	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320606892	CHEV_2_164570188	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29720906					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164586608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12667	CpG island 12667	889 bp proximal
Dnttip1	deoxynucleotidyltransferase, terminal, interacting protein 1	1327 bp upstream
Rr569686	regulatory region 569686	669 bp proximal
Rr569687	regulatory region 569687	1233 bp proximal
Tssr21635	transcription start site region 21635	1291 bp upstream
Tssr21636	transcription start site region 21636	1340 bp upstream
Tssr27522	transcription start site region 27522	1580 bp upstream
Tssr27523	transcription start site region 27523	1564 bp upstream
Tssr27524	transcription start site region 27524	1541 bp upstream
Tssr27525	transcription start site region 27525	1507 bp upstream
Tssr27526	transcription start site region 27526	1477 bp upstream
Tssr27527	transcription start site region 27527	1208 bp downstream
Tssr27528	transcription start site region 27528	1228 bp downstream
Wfdc3	WAP four-disulfide core domain 3	within coordinates