rs29721197 SNP Detail

Summary

• ID
  rs29721197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31344518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG CTGGTTGTCT CGCTGTCACA
  Y
  GTCTGGTTCA AAGCTGAGGC TGAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45357046	mCV23581689	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss320222254	CHEV_2_31310026	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29721197					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31344518 () rs orientation: forward

Symbol	Name	Function Class
Gm74859	predicted gene, 74859	within coordinates
Hmcn2	hemicentin 2	within coordinates
Rr554632	regulatory region 554632	1091 bp proximal
Tssr17185	transcription start site region 17185	706 bp downstream
Tssr17186	transcription start site region 17186	38 bp downstream
Tssr17187	transcription start site region 17187	within coordinates
Tssr17188	transcription start site region 17188	263 bp upstream