rs29721770 SNP Detail

Summary

• ID
  rs29721770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100657083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGGGTAAGA TTATATTGGT TGACCTTCAA TTTCAACAGC CTGACTATGG ATGGGACTCT
  TACAGACATC TAACTTATTA AAAACTTCAT CAGGGGCTGG AGAGATGGCT CAGTGGTTAA
  GAGCTCTTCC AGAGGTCTTG AGTTCATTTC CCAGCAACCA CATGGTGGCT CACAACCATC
  TATAGTAGTA TCTAATGCCC TCTTCTGGAG TGTCTGAAGC CAGCTACAGT GTACTTACAT
  TAGATAGATA GATAGATAGA TAGATAGATA GATAGATAGA TAGATAGATA GACAGACAGA
  Y
  AGACAGACAG ACAGACAGAC AGACACTTCA TCAGAAGCTA AGGACACCAA ACTCTACATC
  CTGGAATGGT CACAAGTAGT AAGGCCCACA CTGCACAAAT CCTGCCCTGA CTCTATACTT
  TCATGGTTGG TTGGTTGGTT GGTTGGTTAG TTGGTTTCTT TTTTTTAATT TTTCTGTCAA
  AATTAAGTTA TAGAGTTCAA GCCCAAGTCC CAGAGTGCCC TGCACTTGAA GGAGTCTGTG
  TAAACAGCCC AAGCCATGGA TCACTGCAAG CCACCATCTC ACCTCTGACC CCTGTCTGCC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39110936	mCV25159067	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29721770					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100657083 () rs orientation: forward

Symbol	Name	Function Class
Gm57598	predicted gene, 57598	1764 bp upstream
Ocln	occludin	within coordinates
Rr484924	regulatory region 484924	1952 bp distal
Rr484925	regulatory region 484925	1250 bp distal
Rr484926	regulatory region 484926	1218 bp proximal