rs29721885 SNP Detail

Summary

• ID
  rs29721885
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102284336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGTTCTC TTGCCCACTG
  TGTAACAGTG GCCAGGGCAC AAAGCCTGGC ACTGAGCGCA TATTCAGCAA TGATGCAATG
  ATTCACCTAG AACGAGATGA AGCTTTTCAA GTAGCATCAT CACGTTTGTT TGTTTGTTTA
  AATATCTCAC TGCTACAGGA TACAAAGAAA CTTTTCTCTC AAGTTCTTAA AAGGAAAAAA
  W
  AATATTGGTG AGGGACTGAA TGTGAGGGGA GCAAGATTAT TAGTCTGGGA AAGTCCACTT
  TAATACCAGC CACTCCAAGT TCCAGACTCT CACAGTCACA CTAAGGGTAC TGATGAAAGG
  AGGCGTGAAG AGCCAGGCTA AGATCTCATG TCTCAGATGA TGAGTGGACT TCATGTTTGA
  GCCCCAGAAC CAGACTTAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45355271	mCV23728609	ABI	CRAMUS_MOUSE	f	SNP	T		A	T
ss147112359	ENSMUSSNP6960245	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			T
ss320437762	CHEV_2_102294148	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29721885					SNP	T	T	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102284336 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	1711 bp distal
Rr561696	regulatory region 561696	1402 bp distal
Rr561697	regulatory region 561697	153 bp distal
Rr561698	regulatory region 561698	400 bp distal