rs29722178 SNP Detail

Summary

• ID
  rs29722178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:19281814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAACATAAC ATTGCTGCCT TAGGAAGGCT GCTTTTGTTT
  AAAGGATCGT CATTTTAAAA AAACAAAAAC AAAAAACTAA GGATAATAAT TTCAAAGCGC
  Y
  TGGGACTTTA AAAGTCCTTT GAGAGCCTTG GAGATTGGAC AGTGGGTAAT GGCCCTTGTC
  ACTAAGCCTG AGTTCGAGTC TCAAGTCCTA CCCACACAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45357058	mCV22768246	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss146316361	ENSMUSSNP3202400	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29722178					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19281814 () rs orientation: forward

Symbol	Name	Function Class
Armc3	armadillo repeat containing 3	Intron
Rr396792	regulatory region 396792	314 bp downstream
Rr552447	regulatory region 552447	221 bp distal
Rr552448	regulatory region 552448	525 bp distal