rs29723858 SNP Detail

Summary

• ID
  rs29723858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122835539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT TGAGTCTTCT CTGCACCCTG
  Y
  TGTCGATGCC TCTGGGTTCC CACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45854999	mCV22632326	ABI	CRAMUS_MOUSE	f	SNP		C					T	T
ss51196185	NES13816070	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T			T		C	C
ss149189826	ENSMUSSNP3503908	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss321669488	CHEV_5_123147485	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs29723858					SNP	C	C	T	C	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51196185	NES13816070	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122835539 () rs orientation: forward

Symbol	Name	Function Class
Gm10064	predicted gene 10064	within coordinates
Gm71244	predicted gene, 71244	within coordinates
Rr378567	regulatory region 378567	657 bp upstream
Rr619947	regulatory region 619947	1625 bp distal
Rr619948	regulatory region 619948	626 bp proximal