rs29724231 SNP Detail

Summary

• ID
  rs29724231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53532201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGT AGTATGGTCA AAGGCTGCTA
  Y
  AAACATTTAG ATAACAAATG TTATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39110837	mCV24544377	ABI	CRAMUS_MOUSE	f	SNP	T		T	C
ss149013930	ENSMUSSNP3878825	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss324341596	CHEV_13_53473534	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29724231					SNP	T	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53532201 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5620	CpG island 5620	586 bp distal
Rr403780	regulatory region 403780	562 bp downstream
Rr480032	regulatory region 480032	278 bp distal
Sptlc1	serine palmitoyltransferase, long chain base subunit 1	800 bp upstream
Tssr122583	transcription start site region 122583	792 bp upstream