rs29724657 SNP Detail

Summary

• ID
  rs29724657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23619841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAC TAGGGCTCAA TTAAAGGTTA
  R
  CCAGTTCACA AGAAAACAAA TTTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45854610	mCV23736135	ABI	CRAMUS_MOUSE	f	SNP		A	A				A		G
ss47624442	NES10278359	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		G	G	G	A	A	G	A	G
ss148057213	ENSMUSSNP1119404	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29724657					SNP	A	A	A	A	A	A	A	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624442	NES10278359	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23619841 () rs orientation: forward

Symbol	Name	Function Class
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Gm57286	predicted gene, 57286	1686 bp downstream
Rr377698	regulatory region 377698	within coordinates
Rr608092	regulatory region 608092	1322 bp distal
Rr608093	regulatory region 608093	within coordinates
Rr608094	regulatory region 608094	699 bp proximal
Rr608095	regulatory region 608095	1103 bp proximal