rs29725540 SNP Detail

Summary

• ID
  rs29725540
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:19583705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TATTTACCTT CTTCATCCTC TCTGAGGAGT CCTTACTTTT CTAATTGCTG ATCAAGTCAC
  TTGGACCATG CTAATGTTCT ATCTATTGTT CCCTGACACT GTTATCTTAG CATATTCCCT
  TTACATTCTT ACTTTCTATG GTTCAGACTG TGTACTCACA TATGAAGATT TGGAGGTGGG
  AGTCTCCAAA AGATAGCATG TGATGTTTAT CTTTCTGTGT CTGATTTGCC TTACTCAATA
  TGAGCTTTTC TCTATATCTG CAAGGTGTAT GATTTTGTTT TTCTTTACAG CTGCATATTG
  K
  ATGTATACAT TATATATATA TGTATGTATA TATGTATGTG TATATATATA TATCACATTT
  TTATTACTAA TTCCATTTGA AGAACAGTTA GGTTGTGTCT ACTACCTTGT TCTCATGAAT
  ACAGCAGTGA TGAACATGGA TAAGCAAGTA TCCGTTGAGT GGGATGTCAC ATCTTTTGGC
  ATTATGTTCA GGAGTTGTTT AGCTGTATCC ATATGGTTCC TTTTTGAGAA TTCTCCGCAT
  GATTTCCATA GCGGCTGACT CCATTTGCAA TCCCATCAGC AGTGAATGAG GATTTCTTCA
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39610482	mCV23662840	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	T
ss146812275	ENSMUSSNP4264461	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29725540					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:19583705 () rs orientation: forward

Symbol	Name	Function Class
Gm7718	predicted gene 7718	within coordinates
Rr393367	regulatory region 393367	1689 bp upstream