rs29726160 SNP Detail

Summary

• ID
  rs29726160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65516308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAC CCAAGGGGTA AAAGGATGTT
  Y
  GGTAGATGTG CAGTTCCAAG ACATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39609988	mCV24014433	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	C
ss147312002	ENSMUSSNP6176993	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss325657189	CHEV_18_65542891	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29726160					SNP	T	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65516308 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpk2	alpha-kinase 2			Intron
				Noncoding-Transcript-Variant
D18Mit182	DNA segment, Chr 18, Massachusetts Institute of Technology 182			1969 bp proximal
Rr539523	regulatory region 539523			164 bp distal
Tssr151597	transcription start site region 151597			1164 bp downstream
Tssr151598	transcription start site region 151598			1139 bp downstream
Tssr151599	transcription start site region 151599			525 bp downstream
Tssr153696	transcription start site region 153696			1557 bp upstream
Tssr153697	transcription start site region 153697			1318 bp upstream
Tssr153698	transcription start site region 153698			706 bp upstream