rs29726516 SNP Detail

Summary

• ID
  rs29726516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126921733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CATGGCTCTG CATCAGCTCC TGCTTCCTGA CCTGCTTGAG TTCCAGTCCT GACTTCCTTG
  GTGATGAACA GCAGTATGGA AGTGTAAGCT AAATAAACCC TTTCCTCCCA ACTGCTTCTT
  GGTCATGATG TTCGTACAGG AATCAAAACC CTGACTAAGA CAGGAAGTAA GGTCAGGAAC
  ACAGAGGCAG AAGAAGCCTG GAGCCAGGAA CTCTAGGAGA GACTGGAGGA AGGCAGTTTC
  CTGGCTTGCT TCCTCTGGCT CATTCAGTTG CTTTTCTTTT CCCTTCCCTG CCCCCCCCCC
  Y
  TCTTTCTCTT TTGTTTTGCT TTTTCAAACA GGGTTCTCTG TGTAGTCCTG GCTTCTCTAT
  AAAGCAGGCT GGCCTAGAAC TCAGAGATTT CCTGCCTCTG CCTCCCAAGT GCTGGGATTA
  AAGGCGTGCA CCACACCACC TAGCATTTAG CTTTCTTAGA CAGCCTATGT CTACCTGCAT
  AGGGATGGCA CTGCCCACAG TGGAGGGACT GTAGCAATTA GCAATGAAGA AAACGCCCTG
  TGACATGGTC ATGGCAAATC TGATCTGGGG ACCTCAGCTG ACGTTCCTGT TCGGAGGCAT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45358189	mCV23164699	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29726516					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126921733 () rs orientation: forward

Symbol	Name	Function Class
Blvra	biliverdin reductase A	within coordinates
Rr38145	regulatory region 38145	1733 bp distal
Rr55562	regulatory region 55562	667 bp proximal
Tssr19977	transcription start site region 19977	888 bp downstream
Tssr19978	transcription start site region 19978	379 bp upstream
Tssr19979	transcription start site region 19979	424 bp upstream
Tssr19980	transcription start site region 19980	439 bp upstream
Tssr19981	transcription start site region 19981	656 bp upstream
Tssr19982	transcription start site region 19982	698 bp upstream
Tssr19983	transcription start site region 19983	756 bp upstream
Tssr19984	transcription start site region 19984	1743 bp upstream