rs29726769 SNP Detail

Summary

• ID
  rs29726769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:96801633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT GGCCCTCGTG GAGGTACAGG
  Y
  ACTGTCATTA TGTCCAGCAT AACTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss39112267	mCV24346681	ABI	CRAMUS_MOUSE	f	SNP	T			C		C
ss61944163	NES17104345	PERLEGEN	MM_PANEL2	f	SNP		T	C		C		T		C	C
ss145024452	ENSMUSSNP2704604	ENSEMBL	ENSEMBL_Sanger	f	SNP	T					C
ss324494665	CHEV_13_97435080	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs29726769					SNP	T	T	C	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61944163	NES17104345	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:96801633 () rs orientation: forward

Symbol	Name	Function Class
Hmgcr	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	within coordinates
Rr281794	regulatory region 281794	1567 bp proximal
Rr281795	regulatory region 281795	1967 bp proximal
Rr285480	regulatory region 285480	56 bp distal
Rr285481	regulatory region 285481	368 bp proximal
Tssr123569	transcription start site region 123569	1584 bp downstream