rs29728015 SNP Detail

Summary

• ID
  rs29728015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148491646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGATGTT ATTATCCACA
  AAACTCGTTG GAACCCTCTC CTGACATAAT TCAGGCATGA AGGAGCACTG CAGAACACAA
  ACGGATTTCT CTGCCGTGCT GCCTTTACTG TGGAGCGTGA AGTGAGGGGC TGCAGAGAGG
  AGCCTGCCGG GGCACAGCAG GGAAGGGTGA CACCATCCGT CCTCGAATCT ATTGTCAGCA
  Y
  CACCCGGGAG GCAGTGGATG ACACAGCAGT TTTGATATGG AAAAACTAAC CTCACAAGAA
  ATCAAAGAGC TAACTCTGCC GCGAAGGCGT CTTTGCTGAT CCCCTCTGCC TCTCTGACGC
  TCTTCCGCAC TTCCGGGGAA CTTCATCTAA ATCTCTAAGG GCCTTTCTAA GAATGGATGA
  TGACACCGCG GGCCCCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45856208	mCV22903063	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss321718369	CHEV_5_149366412	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29728015					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148491646 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	975 bp upstream
Cpgi17076	CpG island 17076	1689 bp distal
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	911 bp upstream
Rr378792	regulatory region 378792	within coordinates
Rr378793	regulatory region 378793	1552 bp upstream
Rr625195	regulatory region 625195	1557 bp distal
Rr625197	regulatory region 625197	985 bp distal
Rr625198	regulatory region 625198	681 bp distal
Rr625199	regulatory region 625199	within coordinates
Rr625200	regulatory region 625200	1698 bp proximal
Tssr54577	transcription start site region 54577	1993 bp upstream
Tssr54578	transcription start site region 54578	955 bp upstream
Tssr54579	transcription start site region 54579	811 bp upstream