rs29728175 SNP Detail

Summary

• ID
  rs29728175
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135964428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACT GGACCAACGC CTGCCTGAAC
  K
  CACACCCGCT ATAGTTTTGA CTGCG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45856509	mCV25030096	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss144510857	ENSMUSSNP1014170	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss321698188	CHEV_5_136411444	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs29728175					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135964428 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16773	CpG island 16773	494 bp distal
Gm40346	predicted gene, 40346	1258 bp upstream
Gm57297	predicted gene, 57297	within coordinates
Rr378682	regulatory region 378682	within coordinates
Rr622480	regulatory region 622480	1031 bp distal
Rr622481	regulatory region 622481	883 bp distal
Rr622482	regulatory region 622482	within coordinates
Tssr49205	transcription start site region 49205	454 bp downstream
Tssr53779	transcription start site region 53779	1869 bp upstream
Tssr53780	transcription start site region 53780	1006 bp upstream
Tssr53781	transcription start site region 53781	961 bp upstream
Tssr53782	transcription start site region 53782	941 bp upstream
Ywhag	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	958 bp upstream