rs29728321 SNP Detail

Summary

• ID
  rs29728321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123129539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT CTAAGTGGTC ACTCAATAAA
  Y
  GTTGAGCCCT TGATGGATCA CCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45855525	mCV24884190	ABI	CRAMUS_MOUSE	f	SNP		T	T					C
ss51195104	NES13813331	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	C		T	C	C	C		C	C	T	C		T
ss149192253	ENSMUSSNP5005313	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss321670145	CHEV_5_123441485	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29728321					SNP	T	T	T	C	T	C	C	C	T	C	C	C	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195104	NES13813331	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123129539 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16566	CpG island 16566	1943 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	1 bp downstream
Rr620034	regulatory region 620034	1680 bp distal
Rr620035	regulatory region 620035	1535 bp distal
Rr620036	regulatory region 620036	660 bp distal
Rr620037	regulatory region 620037	within coordinates
Tssr48734	transcription start site region 48734	1864 bp downstream
Tssr48735	transcription start site region 48735	1737 bp downstream
Tssr48736	transcription start site region 48736	1714 bp downstream
Tssr48737	transcription start site region 48737	1533 bp downstream
Tssr48738	transcription start site region 48738	707 bp downstream
Tssr48739	transcription start site region 48739	696 bp downstream
Tssr48740	transcription start site region 48740	651 bp downstream
Tssr48741	transcription start site region 48741	612 bp downstream
Tssr53175	transcription start site region 53175	1186 bp upstream
Tssr53176	transcription start site region 53176	1069 bp upstream
Tssr53177	transcription start site region 53177	1013 bp upstream
Tssr53178	transcription start site region 53178	981 bp upstream
Tssr53179	transcription start site region 53179	947 bp upstream
Tssr53180	transcription start site region 53180	903 bp upstream