rs29728471 SNP Detail

Summary

• ID
  rs29728471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96357643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGGGGT GAGAGAGTGG
  GACCTCCTGG CCCGCCTTGG GTGGAGGCGA AGTTTGATGG ATTCTGTTTT CTCTTTGCTA
  TGAAGAAGAT TGAACTCAGA GGCGCGCACA CGCTAGCTCC GCGCACGGTC GCCTAGCAAT
  ATTCATTTAA AGAAAAACCG AATCTTAAGA AGGCCAAGAG TATAGCGAAG GAAGCTGGGG
  R
  CACTTCAGCT TTCTCAAGAC TTTAGTCAGA GAACCAGGTT CCCTCTATTT AAATGACCGT
  TCGGAGTACA TCTGCAGGGT CCAAAATTAA AAATAAGAAG GAATGAATAA TTAATTACAG
  AGTTTTCAAC AAAGCCATTC CCCACCCCCG CCCCGAAGGT TGATAAACCT TTGAACCCGA
  GCCACGAAAG GCAGTCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45855325	mCV25015049	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss148870813	ENSMUSSNP560045	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss321616896	CHEV_5_96638803	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29728471					SNP	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96357643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	179 bp proximal
Gm72185	predicted gene, 72185	within coordinates
Mrpl1	mitochondrial ribosomal protein L1	within coordinates
Rr367885	regulatory region 367885	167 bp upstream
Rr614892	regulatory region 614892	873 bp distal
Rr614893	regulatory region 614893	281 bp distal
Rr614894	regulatory region 614894	within coordinates
Rr614895	regulatory region 614895	258 bp proximal
Rr614896	regulatory region 614896	371 bp proximal
Tssr47395	transcription start site region 47395	296 bp downstream
Tssr47396	transcription start site region 47396	21 bp downstream
Tssr47397	transcription start site region 47397	344 bp upstream
Tssr51962	transcription start site region 51962	221 bp downstream