rs29728790 SNP Detail

Summary

• ID
  rs29728790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:35357408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCAGAGGAG ATTGCAGCCC TCCCTCCCCA AGACAGGACA
  AGGCCTGAAC TTTAAAAACG CTAAGTGACC TTCCAGGCAG GCTGTGAAGT TTCCCAGCAA
  Y
  TAGGAAGACA CATCACTCAC TCAGATGGTA AAGTGGCTGC TACTTAGAAC ACATAGGAAA
  AGTGCTCTCA GAGAATGTTG TGCCGATGGC CTTGCATAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39111388	mCV25144901	ABI	CRAMUS_MOUSE	f	SNP	T	T	C			T		C
ss51091097	NES14361643	PERLEGEN	MM_PANEL2	f	SNP			C	C	C		C	C	T	C		C	T	C	C		C
ss148862474	ENSMUSSNP3079415	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
ss324314286	CHEV_13_35265294	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29728790					SNP	T	T	C	C	C	T	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51091097	NES14361643	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:35357408 () rs orientation: forward

Symbol	Name	Function Class
Rr275746	regulatory region 275746	1208 bp distal
Rr275747	regulatory region 275747	208 bp distal