rs29729446 SNP Detail

Summary

• ID
  rs29729446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:86412644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACA TTTTAAGGGA CTGCGTATTT
  R
  CAGTAGCAGT TTGGGGTGAT TCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss39611152	mCV23896701	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss147658583	ENSMUSSNP4095428	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G		G
ss325714166	CHEV_18_86563911	CHEVERUD	SCREENING_POP	f	SNP					G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29729446					SNP	A	G	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86412644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10352	CpG island 10352	154 bp distal
Cpgi10353	CpG island 10353	282 bp proximal
Gm54041	predicted gene, 54041	744 bp upstream
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1	433 bp upstream
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon	within coordinates
Tssr152242	transcription start site region 152242	253 bp upstream
Tssr152243	transcription start site region 152243	274 bp upstream
Tssr152244	transcription start site region 152244	291 bp upstream
Tssr152245	transcription start site region 152245	399 bp upstream
Tssr152246	transcription start site region 152246	433 bp upstream
Tssr152247	transcription start site region 152247	483 bp upstream
Tssr152248	transcription start site region 152248	665 bp upstream
Tssr152249	transcription start site region 152249	756 bp upstream
Tssr152250	transcription start site region 152250	1027 bp upstream