rs29729491 SNP Detail

Summary

• ID
  rs29729491
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115105386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGTTTTAG AAACTGTCCA GAGGGAAACC TGAATTCAGT
  ACATCTTTAA GCCCCAGTGA ATTTCAAAGG CTGGCATGCG AAAGAATTTC CCATCAAGCC
  R
  AGCAGTAAGA ATGTCTGGGG GTGCGGTAGT AAACATGCCG AGATAACATG GACCTCGAGA
  GCACTGTGCA GACATAGATG AAGCCATCAC ACACATCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss45857427	mCV24915800	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss149119764	ENSMUSSNP924	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A			G
ss321653982	CHEV_5_115417336	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs29729491					SNP	G	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115105386 () rs orientation: forward

Symbol	Name	Function Class
Gm71622	predicted gene, 71622	within coordinates
Hnf1a	HNF1 homeobox A	within coordinates
Hnf1aos1	HNF1 homeobox A, opposite strand 1	1416 bp upstream
Hnf1aos2	HNF1 homeobox A, opposite strand 2	1496 bp upstream
Rr124128	regulatory region 124128	614 bp proximal
Rr618076	regulatory region 618076	1297 bp distal
Rr618077	regulatory region 618077	1761 bp distal
Rr618078	regulatory region 618078	719 bp distal
Rr618079	regulatory region 618079	583 bp distal
Rr618080	regulatory region 618080	225 bp proximal
Rr618081	regulatory region 618081	1006 bp proximal
Tssr48194	transcription start site region 48194	1432 bp upstream
Tssr48195	transcription start site region 48195	1462 bp upstream
Tssr48196	transcription start site region 48196	1501 bp upstream