rs29729720 SNP Detail

Summary

• ID
  rs29729720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119826617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGTCAAGC AGGCCCAAGG TTTATATCCT GGCTTCCTCT
  TTCTGGCAGA TCAGGGACGA AGCTGAGTGT CCTAGGCTCC CAGGCTCAGA TGCCCCTTGG
  R
  ATCCCCAGAG TCTACAGTTG TTCTCTTTAG CCAGGAGCAA AGGCCTAGAG CTGGACAGAC
  ACAGACACAG GCTCTGCAGG TGGGGATTCT GGGAAGATC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45857532	mCV24632725	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29729720					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119826617 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16460	CpG island 16460	1173 bp distal
Cpgi16461	CpG island 16461	416 bp distal
Gm71505	predicted gene, 71505	within coordinates
Rr619145	regulatory region 619145	1964 bp distal
Rr619147	regulatory region 619147	1463 bp distal
Rr619148	regulatory region 619148	378 bp distal
Rr619149	regulatory region 619149	within coordinates
Tbx3os2	T-box 3, opposite strand 2	within coordinates
Tssr48472	transcription start site region 48472	1687 bp downstream