rs29729991 SNP Detail

Summary

• ID
  rs29729991
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:72777970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACGG GTTTGGGACC CGCTAAGTGC
  Y
  GCCAGAGTTC GTAGTAGGCC TATGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss39111809	mCV25188352	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss144619264	ENSMUSSNP2184011	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29729991					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:72777970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5831	CpG island 5831	87 bp distal
Cpgi5832	CpG island 5832	613 bp proximal
Gm20554	predicted gene, 20554	1287 bp upstream
Irx2	Iroquois homeobox 2	within coordinates
Rr281620	regulatory region 281620	within coordinates
Tssr120305	transcription start site region 120305	1056 bp downstream
Tssr120306	transcription start site region 120306	1026 bp downstream
Tssr120307	transcription start site region 120307	1003 bp downstream
Tssr123170	transcription start site region 123170	1346 bp upstream
Tssr123171	transcription start site region 123171	1265 bp upstream
Tssr123172	transcription start site region 123172	1244 bp upstream