rs29730094 SNP Detail

Summary

• ID
  rs29730094
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32902779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAT CTCCTGCTCC CTTTAACTCA
  Y
  GGCCCCACCC TACAGGTCTT CGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45858605	mCV22741288	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss321505775	CHEV_5_33088083	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29730094					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32902779 () rs orientation: forward

Symbol	Name	Function Class
Gm71279	predicted gene, 71279	1049 bp upstream
Pisd	phosphatidylserine decarboxylase	within coordinates
Rr609420	regulatory region 609420	330 bp proximal
Rr609421	regulatory region 609421	867 bp proximal
Rr609422	regulatory region 609422	1060 bp proximal
Tssr45794	transcription start site region 45794	684 bp upstream
Tssr45795	transcription start site region 45795	1086 bp upstream
Tssr50589	transcription start site region 50589	837 bp downstream
Tssr50590	transcription start site region 50590	882 bp downstream
Tssr50591	transcription start site region 50591	908 bp downstream