rs29730198 SNP Detail

Summary

• ID
  rs29730198
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:46092335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGAGAAGA TGAACAGGAA
  ATGCAGACCC CTTGCACTCA CTCTGAGCCA CAGGAAATCC TGGAGCAGAA TTATAAAGAA
  ACAACAGTCT GGCCCTAAGA CAGAAAAGAT GACCAATGTA GAAAGAATGA GCAAACCAAA
  GCTCTGTGTT GCCATGGGAA TTCATTAAGA AAAAAATATA TTTATTATGT GTGTGGACAT
  K
  GGATGAGGTC ACATGCCATC ATGTACCTGT GAAGGTCAGA GGACAACTTG TGGAGCCAGT
  TCCATCTTTC TGTTTTTACA TAGATCCCGG GGACCTAACT GGACACCAGG CCTGAGTAGA
  AGCAGCCTTA GCCACTGAGC CATCTCGCCA GCTCTAGATA GGAATTTTTG TGCCATTCTC
  TGTTATAAGA CAGGGTATCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39112457	mCV24562089	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	T
ss148968482	ENSMUSSNP2524902	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29730198					SNP	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46092335 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930453C13Rik	RIKEN cDNA 4930453C13 gene			1949 bp downstream
Atxn1	ataxin 1			Intron
				Noncoding-Transcript-Variant
Rr478826	regulatory region 478826			1612 bp distal
Rr478827	regulatory region 478827			1986 bp proximal
Tssr122337	transcription start site region 122337			1836 bp downstream