rs29730332 SNP Detail

Summary

• ID
  rs29730332
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30281416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACATGCTC TGGGCCTTAG
  TCAGAGGTCA GAGAACCGTT GCATACTGGC AGAGGCAGAC AAGGAAATAA TTACAGTCAA
  GTGTAGCCAG AGATGAGGTA GGCAAAGGAG GTGCAATTGT GGGAGACCAC TGGAACTCCC
  CCACCCCCTT TCTGAGGTAG CCCAGACTGG CTTCCAACTC ACAGAGATCC CCCTGCTTCT
  K
  TGGAGGCCCT TCTCTTAATT TTCAGAACCT GAAGCTATGA ACTGACAAGT CAGCCTGGGC
  CAGGCAAATG GGGCAGGAGT GTGTGTGCCC ATTCCTTGCA GAGAAATTTG AGGAATTGGA
  ATCTGGCCTA GACAGTAAGT AGGTCTGTCT GGAGAGAGTT GGTTCAGAAA GGGGACGTGG
  GTGGGAGGTG TGGCTGTTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45358347	mCV23155803	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G	G
ss146398539	ENSMUSSNP2719189	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29730332					SNP	T	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30281416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11435	CpG island 11435	572 bp proximal
Dolpp1	dolichyl pyrophosphate phosphatase 1	850 bp upstream
Gm75227	predicted gene, 75227	within coordinates
Rr396863	regulatory region 396863	782 bp upstream
Rr554304	regulatory region 554304	360 bp proximal
Rr554305	regulatory region 554305	861 bp proximal
Rr554306	regulatory region 554306	979 bp proximal
Rr554307	regulatory region 554307	1023 bp proximal
Tssr17111	transcription start site region 17111	857 bp upstream
Tssr17112	transcription start site region 17112	1001 bp upstream
Tssr17113	transcription start site region 17113	1043 bp upstream