rs29730394 SNP Detail

Summary

• ID
  rs29730394
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115628275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTTGACTC GATTTGCATA
  AGAGTCCCCA GCATCCCAAG CGACTGCCGC GTAGTTTGCA AAACACGGAT GTTCGGGCTC
  GAGATAACCC ACTGGCAAGA ACGTGTCCAC GCAGATAACC GAGATGGAAC CGCCGGGCTC
  CGCTCCCGTC ACGTGGAGGT CGCGCGTGGA CTGAAGCTCA CCGTGACTGA AATGGGAGTC
  S
  TCAGCCCTGG GAGGCTGAGC GAGCACGCTT ACTCGTCAGC TTTGCGCAGT GGCAGTATCG
  TAGCCAATGA GGTTTATCCG AGGCGCGATT ATTGCTAATT GAAAACTTTT CCCAATACCC
  CGCCATGACG ACTTGAAATA TAGTCGGCAT TGGCAATTTT TGACAGTCTC TACGGAGACT
  GAATATTCAT GTTTAAACAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45856336	mCV23803429	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss149125729	ENSMUSSNP2107999	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29730394					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115628275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16375	CpG island 16375	within coordinates
Cpgi16376	CpG island 16376	1575 bp proximal
Gm13836	predicted gene 13836	1739 bp downstream
Gm24265	predicted gene, 24265	617 bp downstream
Gm24407	predicted gene, 24407	38 bp upstream
Gm57305	predicted gene, 57305	207 bp upstream
Rr1425	regulatory region 1425	within coordinates
Rr108333	regulatory region 108333	1875 bp distal
Rr124163	regulatory region 124163	within coordinates
Rr124164	regulatory region 124164	1525 bp proximal
Tssr48292	transcription start site region 48292	894 bp downstream
Tssr48293	transcription start site region 48293	758 bp downstream
Tssr48294	transcription start site region 48294	682 bp downstream
Tssr48295	transcription start site region 48295	15 bp upstream
Tssr48296	transcription start site region 48296	110 bp upstream
Tssr48297	transcription start site region 48297	1754 bp upstream
Tssr52808	transcription start site region 52808	1284 bp upstream
Tssr52809	transcription start site region 52809	1267 bp upstream
Tssr52810	transcription start site region 52810	633 bp upstream
Tssr52811	transcription start site region 52811	376 bp upstream
Tssr52812	transcription start site region 52812	263 bp upstream
Tssr52813	transcription start site region 52813	235 bp upstream
Tssr52814	transcription start site region 52814	180 bp upstream
Tssr52815	transcription start site region 52815	12 bp upstream
Tssr52816	transcription start site region 52816	128 bp downstream
Tssr52817	transcription start site region 52817	1670 bp downstream