rs29730817 SNP Detail

Summary

• ID
  rs29730817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:106741649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTTCTAT GACCTTTTAA
  TATGTTGGTA AACATAGAAA ACTGTTCACA TGACCTAGCT GACATGAGAG AACGAGGGAA
  GGACAGACAC AGGAAAGGGC TGACACATAC TGAGAAGCTG TGAGCTCTGA CGTGGACGCA
  CCAACACCAG CCAGAGTCCA GAAACTCAGC ACACCCCCAC CCCAGCCTCC TGGGAGTCCG
  R
  AGCCACATGG CCCCCCACCC CCAGCCTCCC CGGAGTCCGG AGCCACACCG CCTCCACCAT
  GAACTGCATC CTTAAACCAT GAGACAGAAT AAACCCTTCC TCTATTAGAA GTTGCTTTTT
  AGTCAGTGAT TTCATCAAAA CAAGGAAATG AACGAATGAG TACTGGATTT ACCAGCTTAA
  TGTTTTGCAT CCCAGTTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J
ss45857642	mCV24920415	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss149009021	ENSMUSSNP3835020	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J
rs29730817					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:106741649 () rs orientation: forward

Symbol	Name	Function Class
Gm28039	predicted gene, 28039	within coordinates
Rr616368	regulatory region 616368	795 bp proximal