rs29730927 SNP Detail

Summary

• ID
  rs29730927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127903622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CACACAGACA CACACACACT AGTTTGGAAG TCTATTGTAA TGTTAAATGT ACACTTATTC
  TATGATCCAG AAATTCTGTC CCTAGAGATA TGGCCAAGAA ATGATGCTAC ATGGTTCATA
  AATAGCCTTA TACAGGAGTG TTCCTAACAG CTCTATTAAT AACCCCAAGT TGGAAACTGG
  AAACTGAATG TTTATAGATA TGAAACTAGA CAAGTAAACT GTGGTTGGCT TCACATAGTG
  AATCATGTGA CGCAGCATGT GTGAGTTCTA CTGACATGCT TAGTGATGTG AAAGCGTGTA
  Y
  ACCAGATACC CCATGTATTC GACGGTCGAG GAGGAGGAAA GCCAGCTGAC GGTGATATAG
  TGCAGCAGTC ACAATCAGAG AGGGAGAGGG TGGTGCTGCA TGCGGAAGCA CAGAAGTTAT
  CTGGGGAACT CTGTCTCTCA ATTGAGTGAC ATGATTCCAG GGGGTATGTA CACATATGAA
  AGAAATCACT GATGAGTGTT GTTTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTATTGAG AAATGACTTG GTTATTAAAG TCCTCACGCA GCCATGAGGA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45358243	mCV23907265	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs29730927					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127903622 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	within coordinates
Rr397293	regulatory region 397293	411 bp downstream
Rr397294	regulatory region 397294	within coordinates
Rr564634	regulatory region 564634	within coordinates
Tssr20040	transcription start site region 20040	1398 bp upstream
Tssr20041	transcription start site region 20041	1419 bp upstream