rs29731530 SNP Detail

Summary

• ID
  rs29731530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138116186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGG GCATTATCTA CTACAAGGTA
  R
  TAATTGCTGT TCATTTGATG CAATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45856555	mCV22887535	ABI	CRAMUS_MOUSE	f	SNP	A	G						G
ss60847504	NES16003333	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G	G	G	G	A	G	G	G	A
ss144538087	ENSMUSSNP4799187	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29731530					SNP	A	G	A	G	G	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847504	NES16003333	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138116186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16853	CpG island 16853	643 bp distal
Gm71396	predicted gene, 71396	1330 bp downstream
Rr399441	regulatory region 399441	799 bp downstream
Rr623030	regulatory region 623030	873 bp distal
Rr623031	regulatory region 623031	within coordinates
Rr623032	regulatory region 623032	473 bp proximal
Tssr49413	transcription start site region 49413	938 bp downstream
Tssr54072	transcription start site region 54072	1056 bp upstream
Zscan21	zinc finger and SCAN domain containing 21	within coordinates