rs29731546 SNP Detail

Summary

• ID
  rs29731546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35885431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATT CTATGGACTA AAGAGACAGG
  Y
  ACTGTGCCTG ACGCAAGAAG TTTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45857548	mCV22744176	ABI	CRAMUS_MOUSE	f	SNP	C	C			C	T
ss47689609	NES10236386	PERLEGEN	MM_PANEL2	f	SNP			C	C			T	C		C	T	T	C
ss148227240	ENSMUSSNP3101407	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C				T
ss321510499	CHEV_5_36070736	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29731546					SNP	C	C	C	C	C	T	T	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47689609	NES10236386	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35885431 () rs orientation: forward

Symbol	Name	Function Class
Rr609994	regulatory region 609994	443 bp distal
Rr609995	regulatory region 609995	449 bp proximal
Rr609996	regulatory region 609996	1179 bp proximal
Sh3tc1	SH3 domain and tetratricopeptide repeats 1	within coordinates
Tssr45957	transcription start site region 45957	321 bp upstream
Tssr50711	transcription start site region 50711	920 bp downstream
Tssr50712	transcription start site region 50712	935 bp downstream
Tssr50713	transcription start site region 50713	961 bp downstream
Tssr50714	transcription start site region 50714	1001 bp downstream
Tssr50715	transcription start site region 50715	1173 bp downstream
Tssr50716	transcription start site region 50716	1203 bp downstream