rs29731561 SNP Detail

Summary

• ID
  rs29731561
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23625245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAT CAGTTTGTAT CATGCACTGG
  R
  CTATTGTAAT TGGGGTCTTT TCATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45856952	mCV23735846	ABI	CRAMUS_MOUSE	f	SNP		A	G				G		A
ss47624406	NES10278153	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	G		A	A	A	A		A	A		A
ss148057296	ENSMUSSNP2735073	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
ss321488929	CHEV_5_22926065	CHEVERUD	SCREENING_POP	f	SNP												A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29731561					SNP	A	A	G	A	A	G	G	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624406	NES10278153	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23625245 () rs orientation: forward

Symbol	Name	Function Class
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15579	CpG island 15579	1527 bp distal
Gm57286	predicted gene, 57286	1653 bp upstream
Gm72704	predicted gene, 72704	1091 bp downstream
Rr608096	regulatory region 608096	1938 bp distal
Rr608097	regulatory region 608097	1924 bp distal
Rr608098	regulatory region 608098	1723 bp distal
Rr608099	regulatory region 608099	1163 bp distal
Tssr45362	transcription start site region 45362	1597 bp downstream
Tssr50265	transcription start site region 50265	1690 bp upstream