rs29731654 SNP Detail

Summary

• ID
  rs29731654
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:16141638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAA GTTGTGGCAC ATAAATGTGT
  R
  CACATTTTTG GTGTTGTTTT AAATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45856650	mCV25454904	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss147941970	ENSMUSSNP1322302	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29731654					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:16141638 () rs orientation: forward

Symbol	Name	Function Class
Cacna2d1	calcium channel, voltage-dependent, alpha2/delta subunit 1	within coordinates
Cpgi15553	CpG island 15553	999 bp distal
Gm3510	predicted gene 3510	998 bp upstream
Rr607526	regulatory region 607526	1719 bp distal
Rr607527	regulatory region 607527	within coordinates
Tssr1426	transcription start site region 1426	1961 bp downstream
Tssr1427	transcription start site region 1427	1740 bp downstream
Tssr45211	transcription start site region 45211	1944 bp downstream
Tssr45212	transcription start site region 45212	1921 bp downstream
Tssr45213	transcription start site region 45213	1894 bp downstream
Tssr45214	transcription start site region 45214	1853 bp downstream
Tssr45215	transcription start site region 45215	1714 bp downstream
Tssr45216	transcription start site region 45216	1678 bp downstream