rs29732892 SNP Detail

Summary

• ID
  rs29732892
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123129129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGACT CGCTCTCAGT CATGCTGCTT
  R
  CCCTTTCAAA TGTCCACCGA CTTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45858164	mCV24884192	ABI	CRAMUS_MOUSE	f	SNP		G	G					A
ss51195108	NES13813323	PERLEGEN	MM_PANEL2	f	SNP	G			A	G	A	A		A	A	A		A	A	G		G
ss149192228	ENSMUSSNP2432936	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss321670141	CHEV_5_123441075	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29732892					SNP	G	G	G	A	G	A	A	A	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195108	NES13813323	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123129129 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16566	CpG island 16566	1533 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	within coordinates
Kdm2b	lysine (K)-specific demethylase 2B	1796 bp upstream
Rr620032	regulatory region 620032	1918 bp distal
Rr620033	regulatory region 620033	1771 bp distal
Rr620034	regulatory region 620034	1270 bp distal
Rr620035	regulatory region 620035	1125 bp distal
Rr620036	regulatory region 620036	250 bp distal
Rr620037	regulatory region 620037	within coordinates
Tssr48730	transcription start site region 48730	1814 bp downstream
Tssr48731	transcription start site region 48731	1785 bp downstream
Tssr48732	transcription start site region 48732	1751 bp downstream
Tssr48733	transcription start site region 48733	1700 bp downstream
Tssr48734	transcription start site region 48734	1454 bp downstream
Tssr48735	transcription start site region 48735	1327 bp downstream
Tssr48736	transcription start site region 48736	1304 bp downstream
Tssr48737	transcription start site region 48737	1123 bp downstream
Tssr48738	transcription start site region 48738	297 bp downstream
Tssr48739	transcription start site region 48739	286 bp downstream
Tssr48740	transcription start site region 48740	241 bp downstream
Tssr48741	transcription start site region 48741	202 bp downstream
Tssr53171	transcription start site region 53171	1986 bp upstream
Tssr53172	transcription start site region 53172	1955 bp upstream
Tssr53173	transcription start site region 53173	1786 bp upstream
Tssr53174	transcription start site region 53174	1728 bp upstream
Tssr53175	transcription start site region 53175	776 bp upstream
Tssr53176	transcription start site region 53176	659 bp upstream
Tssr53177	transcription start site region 53177	603 bp upstream
Tssr53178	transcription start site region 53178	571 bp upstream
Tssr53179	transcription start site region 53179	537 bp upstream
Tssr53180	transcription start site region 53180	493 bp upstream