rs29734174 SNP Detail

Summary

• ID
  rs29734174
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12474952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATCACCA AAGAGTGGAA
  CTATTTAAAA GGATTAAGAG GTATAGCCCA AGCCAGGCCC AGTGCCTCTC CCTTCCTGCG
  GCCTGGGAAT CCGGATGTAG AACTTTCAGC TGCTTCTCCA GCACCACGTC TGCCTGCATG
  CCACGTGCTT TCTAGTCATG GTGACAATGG ACTTGAACCT CTCAGACTAT AAGCAAGCCC
  Y
  AGTTAAACGC GTTCCTTTTA AAGAGTTGCT ATGGTCATGG TGTCTCTTCA CAGCAGGAGA
  ATAGAGACTA AGGCATCCTG TCTCAAGATA ATGTTTAAGG GCTGAATAGA GAGCTTGCCT
  AGTGTGATGA GGCCCTGGGT TCTGTGCCAG CACTGCAAAA CCAAACAAAT CAAAAGCAGT
  AAATACAAAT AAAATACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39114461	mCV22708341	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148681921	ENSMUSSNP1495603	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29734174					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12474952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	888 bp proximal
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	within coordinates
Rr369646	regulatory region 369646	512 bp upstream
Rr369647	regulatory region 369647	1078 bp upstream
Tssr118345	transcription start site region 118345	599 bp upstream
Tssr121451	transcription start site region 121451	945 bp upstream
Tssr121452	transcription start site region 121452	789 bp upstream
Tssr121453	transcription start site region 121453	1028 bp downstream
Tssr121454	transcription start site region 121454	1339 bp downstream
Tssr121455	transcription start site region 121455	1361 bp downstream
Tssr121456	transcription start site region 121456	1467 bp downstream
Tssr121457	transcription start site region 121457	1491 bp downstream