rs29734617 SNP Detail

Summary

• ID
  rs29734617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57873026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTT GCAAAATTCT AGTAAGGCGA
  Y
  GAGGGGAGTG AGTGCCACAC TACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45858831	mCV24207268	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss148495430	ENSMUSSNP256864	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss321551258	CHEV_5_58106923	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29734617					SNP	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57873026 () rs orientation: forward

Symbol	Name	Function Class
4932441J04Rik	RIKEN cDNA 4932441J04 gene	within coordinates
Cpgi15874	CpG island 15874	within coordinates
Cpgi15875	CpG island 15875	1168 bp proximal
Gm73136	predicted gene, 73136	within coordinates
Rr611757	regulatory region 611757	1484 bp distal
Rr611758	regulatory region 611758	695 bp distal
Rr611759	regulatory region 611759	963 bp proximal
Rr611760	regulatory region 611760	1933 bp proximal
Tssr46283	transcription start site region 46283	481 bp upstream
Tssr46284	transcription start site region 46284	1241 bp upstream
Tssr46285	transcription start site region 46285	1543 bp upstream
Tssr46286	transcription start site region 46286	1645 bp upstream
Tssr46287	transcription start site region 46287	1796 bp upstream
Tssr46288	transcription start site region 46288	1849 bp upstream
Tssr46289	transcription start site region 46289	1977 bp upstream