rs29736072 SNP Detail

Summary

• ID
  rs29736072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:36391571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTAATGC ACTTCAGCTT
  TCTAGGCACC ATGCGTAGCT CATCCAGTCT GATACTGTGA CTGCTTTCTA AGTCATTGTT
  TAATAAATTA TGCACCTACA GATATATGCA ACTGCCTTCC TTTCATGTTG CAAGGTGATT
  CCATTTCAAT ACTTCATTTA TTCTTCTTAA TAAAAACTTA TGAAATAGGT TATCTCACTT
  Y
  AGCACAGAGA CTCTGGAAAG GCCTTTCTGC TCTCTCAGGA TTGCACCGCC AGTCAGAGGT
  AGAACTCAGC TGGAAGACAG GTTTCCTCAG TCCAGAGCTT CACCTACTAT GTTCTGCTGA
  TGTCTGTGCT TGTCAGTGCC TCTCGTTTAT GATTCAAGGT AAGTTTGACA CAGCAGTCAT
  GAACACTGCA GAGGGTCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39113400	mCV22952742	ABI	CRAMUS_MOUSE	f	SNP		C	T					C
ss51094145	NES14363132	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	C	C	C	C	C	C	C	C	C
ss148872042	ENSMUSSNP4944278	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29736072					SNP	C	C	T	T	T	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51094145	NES14363132	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36391571 () rs orientation: forward

Symbol	Name	Function Class
Fars2	phenylalanine-tRNA synthetase 2, mitochondrial	within coordinates
Gm40912	predicted gene, 40912	165 bp upstream
Rr279014	regulatory region 279014	1799 bp proximal
Rr283246	regulatory region 283246	372 bp distal